MTA Police Department Chief John Mueller is out from his role leading the transit agency’s police force, according to a LinkedIn post written by the top cop Tuesday.

“As my time as the Chief of the MTAPD comes to an end, I want to express my deep gratitude for the opportunity to lead this exceptional police department for the past two and a half years,” he wrote.

An MTA official speaking on background Tuesday confirmed Mueller’s departure, saying he had submitted his resignation effective Dec. 31.

But multiple sources told the Daily News that Mueller, who was widely respected by rank-and-file MTA police officers, was shown the door by MTA brass.

Chief of the MTA Police Department John Mueller, left, and MTA CEO Janno Lieber are pictured at MTA Headquarters on Wednesday, June 29, 2022. (Marc A. Hermann / MTA)
Chief of the MTA Police Department John Mueller, left, and MTA CEO Janno Lieber in 2022. (Marc A. Hermann / MTA)

“I love every one of you and I will cheer for you and I am grateful for you,” Mueller told his officers in a video attached to his LinkedIn post.

“Thank you for giving me such a great two-and-a-half year ride,” he added. “I wish I could have stayed longer.

The MTA official said Mueller’s second-in-command, Chief Thomas Taffe, is serving as the acting chief of the MTA Police.

Two sources told The News that retired NYPD chief Judith Harrison’s name was being floated as Mueller’s permanent successor, but an MTA spokesman said no one had yet been selected for the role and a search for a permanent chief is ongoing.

The MTA Police — distinct from the NYPD’s transit bureau, which patrols the subway system — is largely responsible for patrolling the Metro North and Long Island Rail Road systems, including Grand Central and Penn Station. The department has about 1,200 sworn officers.

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